7.1 The NoBa Atlantis end-to-end ecosystem model
The Nordic and Barents Seas Atlantis model (NoBa Atlantis) is an implementation of the general Atlantis framework developed by Elizabeth Fulton at CSIRO, Australia (Fulton et al. 2011). NoBa has 53 species and functional groups, which are defined to represent the functioning ecosystem even if simplified (Fig. 33). Important commercial species, such as Northeast Atlantic cod, snow crab, mackerel and Norwegian spring spawning herring, are all represented by individual components, while small pelagic fish, corals, benthic detritivores and mesopelagic fish are represented as larger functional groups. The model uses a three-dimensional grid to represent the ecosystem, with each grid cell or "box" representing a specific area of the sea. These boxes are defined based on ecological gradients, bathymetry (sea floor topography), and management boundaries. The parameterization of NoBa is provided in detail in Hansen et al. (2016), and a sensitivity study of the most calibrated parameters is performed in Hansen et al. (2019). There are three different species representations available in the Atlantis framework: age structured vertebrates, age structured invertebrates and invertebrate biomass pools. The age structured invertebrates are in NoBa only representing two groups: the shrimp and the cephalopods. Snow crabs are implemented as vertebrates to be able to reconstruct their expansion and potential biomass development in the Barents Sea. Species are seasonally redistributed according to predefined seasonal patterns, except baleen whales, which have a density dependent movement. There are several options for adding temperature sensitivity in Atlantis, requiring information on optimal temperatures for movement, recruitment and spawning, in addition to how temperature impacts their growth rates. In the version of the model used for this project, a knife-shaped cut off has been applied, which in practice means that individuals who experiences temperature outside of its range will 1) either move or die, 2) not be able to spawn and 3) the temperature will impact its growth rates. In this version of the model code, it was not possible to disconnect these, such that temperature effects will always impact all these processes.